Publications

  1. Naves, E.R., et al., Capsaicinoids: Pungency beyond Capsicum. Trends Plant Sci, 2019. 24(2): p. 109-120.
  2. Flis, A., et al., Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves. Plant Cell Environ, 2019. 42(2): p. 549-573.
  3. Silva, F.M.D., et al., The genetic architecture of photosynthesis and plant growth-related traits in tomato. Plant Cell and Environment, 2018. 41(2): p. 327-341.
  4. Roach, M., et al., Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood (vol 68, pg 3529, 2017). Journal of Experimental Botany, 2018. 69(16): p. 4143-4144.
  5. Fort, A., M.D. Guiry, and R. Sulpice, Magnetic beads, a particularly effective novel method for extraction of NGS-ready DNA from macroalgae. Algal Research-Biomass Biofuels and Bioproducts, 2018. 32: p. 308-313.
  6. Farinas-Franco, J.M., et al., Missing native oyster (Ostrea edulis L.) beds in a European Marine Protected Area: Should there be widespread restorative management? Biological Conservation, 2018. 221: p. 293-311.
  7. Esteves-Ferreira, A.A., et al., Nitrogen metabolism in cyanobacteria: metabolic and molecular control, growth consequences and biotechnological applications. Critical Reviews in Microbiology, 2018. 44(5): p. 541-560.
  8. Dunbar, J.P., et al., Envenomation by the noble false widow spider Steatoda nobilis (Thorell, 1875) – five new cases of steatodism from Ireland and Great Britain. Clinical Toxicology, 2018. 56(6): p. 433-435.
  9. Mengin, V., et al., Photosynthate partitioning to starch in Arabidopsis thaliana is insensitive to light intensity but sensitive to photoperiod due to a restriction on growth in the light in short photoperiods. Plant Cell Environ, 2017.
  10. Ishihara, H., et al., Growth rate correlates negatively with protein turnover in Arabidopsis accessions. Plant J, 2017. 91(3): p. 416-429.
  11. Han, X., et al., Phytochrome A and B Regulate Primary Metabolism in Arabidopsis Leaves in Response to Light. Front Plant Sci, 2017. 8: p. 1394.
  12. Glaubitz, U., et al., Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles. Plant Cell Environ, 2017. 40(1): p. 121-137.
  13. Fusari, C.M., et al., Genome-Wide Association Mapping Reveals That Specific and Pleiotropic Regulatory Mechanisms Fine-Tune Central Metabolism and Growth in Arabidopsis. Plant Cell, 2017. 29(10): p. 2349-2373.
  14. Esteves-Ferreira, A.A., et al., A Novel Mechanism, Linked to Cell Density, Largely Controls Cell Division in Synechocystis. Plant Physiol, 2017. 174(4): p. 2166-2182.
  15. Dugon, M.M., et al., Occurrence, Reproductive Rate and Identification of the Non-Native Noble False Widow Spider Steatoda Nobilis (Thorell, 1875) in Ireland. Biology and Environment-Proceedings of the Royal Irish Academy, 2017. 117b(2): p. 77-89.
  16. Tohge, T., et al., Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae. Nature Communications, 2016. 7.
  17. Nunes-Nesi, A., et al., Natural genetic variation for morphological and molecular determinants of plant growth and yield. Journal of Experimental Botany, 2016. 67(10): p. 2989-3001.
  18. Leskow, C.C., et al., Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development. Journal of Experimental Botany, 2016. 67(14): p. 4091-4103.
  19. Khozaei, M., et al., Overexpression of plastid transketolase in tobacco results in a thiamine auxotrophic phenotype (vol 27, pg 432, 2015). Plant Cell, 2016. 28(7): p. 1752-1754.
  20. Fort, A., et al., Disaggregating polyploidy, parental genome dosage and hybridity contributions to heterosis in Arabidopsis thaliana. New Phytologist, 2016. 209(2): p. 590-599.
  21. Flis, A., et al., Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis. Plant Cell and Environment, 2016. 39(9): p. 1955-1981.
  22. Czedik-Eysenberg, A., et al., The Interplay between Carbon Availability and Growth in Different Zones of the Growing Maize Leaf. Plant Physiology, 2016. 172(2): p. 943-967.
  23. Sulpice, R. and P.C. McKeown, Moving Toward a Comprehensive Map of Central Plant Metabolism. Annual Review of Plant Biology, Vol 66, 2015. 66: p. 187-210.
  24. Rosado-Souza, L., et al., Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions. Planta, 2015. 242(3): p. 677-691.
  25. Leida, C., et al., Variability of candidate genes, genetic structure and association with sugar accumulation and climacteric behavior in a broad germplasm collection of melon (Cucumis melo L.). Bmc Genetics, 2015. 16.
  26. Khozaei, M., et al., Overexpression of Plastid Transketolase in Tobacco Results in a Thiamine Auxotrophic Phenotype. Plant Cell, 2015. 27(2): p. 432-447.
  27. Ishihara, H., et al., Quantifying Protein Synthesis and Degradation in Arabidopsis by Dynamic (CO2)-C-13 Labeling and Analysis of Enrichment in Individual Amino Acids in Their Free Pools and in Protein. Plant Physiology, 2015. 168(1): p. 74-U758.
  28. Ishihara, H., et al., Quantifying Protein Synthesis and Degradation in Arabidopsis by Dynamic (CO2)-C-13 Labeling and Analysis of Enrichment in Individual Amino Acids in Their Free Pools and in Protein (vol 168, pg 74, 2015). Plant Physiology, 2015. 168(3): p. 1179-1179.
  29. Flis, A., et al., Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. Open Biology, 2015. 5(10).
  30. Ferraro, G., et al., Reduced levels of NADH-dependent glutamate dehydrogenase decrease the glutamate content of ripe tomato fruit but have no effect on green fruit or leaves. Journal of Experimental Botany, 2015. 66(11): p. 3381-3389.
  31. Yang, Y.R., et al., Arbuscular Mycorrhizal Fungi Alter Fractal Dimension Characteristics of Robinia pseudoacacia L. Seedlings Through Regulating Plant Growth, Leaf Water Status, Photosynthesis, and Nutrient Concentration Under Drought Stress. Journal of Plant Growth Regulation, 2014. 33(3): p. 612-625.
  32. Thalhammer, A., et al., Disordered Cold Regulated15 Proteins Protect Chloroplast Membranes during Freezing through Binding and Folding, But Do Not Stabilize Chloroplast Enzymes in Vivo. Plant Physiology, 2014. 166(1): p. 190-201.
  33. Sulpice, R., et al., Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell and Environment, 2014. 37(6): p. 1276-1298.
  34. Sulpice, R., et al., Arabidopsis Coordinates the Diurnal Regulation of Carbon Allocation and Growth across a Wide Range of Photoperiods. Molecular Plant, 2014. 7(1): p. 137-155.
  35. Pokhilko, A., et al., Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Molecular Biosystems, 2014. 10(3): p. 613-627.
  36. Mugford, S.T., et al., Regulatory Properties of ADP Glucose Pyrophosphorylase Are Required for Adjustment of Leaf Starch Synthesis in Different Photoperiods. Plant Physiology, 2014. 166(4): p. 1733-U877.
  37. Kuppusamy, T., et al., Lipid Biosynthesis and Protein Concentration Respond Uniquely to Phosphate Supply during Leaf Development in Highly Phosphorus-Efficient Hakea prostrata. Plant Physiology, 2014. 166(4): p. 1891-U1086.
  38. Kleessen, S., et al., Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana. Nature Communications, 2014. 5.
  39. Hincha, D.K., et al., The Role of Secondary Metabolites and COR Proteins in Plant Freezing Tolerance. In Vitro Cellular & Developmental Biology-Animal, 2014. 50: p. S13-S13.
  40. Florian, A., et al., Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant, 2014. 7(5): p. 893-911.
  41. Dasgupta, K., et al., Expression of Sucrose Transporter Complementary DNAs Specifically in Companion Cells Enhances Phloem Loading and Long-Distance Transport of Sucrose But Leads to an Inhibition of Growth and the Perception of a Phosphate Limitation. Plant Physiology, 2014. 165(2): p. 715-731.
  42. Arrivault, S., et al., Dissecting the Subcellular Compartmentation of Proteins and Metabolites in Arabidopsis Leaves Using Non-aqueous Fractionation. Molecular & Cellular Proteomics, 2014. 13(9): p. 2246-2259.
  43. Sulpice, R., et al., Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions(1[W][OA]). Plant Physiology, 2013. 162(1): p. 347-363.
  44. Sanchez-Villarreal, A., et al., TIME FOR COFFEE is an essential component in the maintenance of metabolic homeostasis in Arabidopsis thaliana. Plant Journal, 2013. 76(2): p. 188-200.
  45. Pal, S.K., et al., Diurnal Changes of Polysome Loading Track Sucrose Content in the Rosette of Wild-Type Arabidopsis and the Starchless pgm Mutant. Plant Physiology, 2013. 162(3): p. 1246-1265.
  46. Nardozza, S., et al., Metabolic analysis of kiwifruit (Actinidia deliciosa) berries from extreme genotypes reveals hallmarks for fruit starch metabolism. Journal of Experimental Botany, 2013. 64(16): p. 5049-5063.
  47. McKeown, P.C., et al., Emerging molecular mechanisms for biotechnological harnessing of heterosis in crops. Trends in Biotechnology, 2013. 31(10): p. 549-551.
  48. Riedelsheimer, C., et al., Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proceedings of the National Academy of Sciences of the United States of America, 2012. 109(23): p. 8872-8877.
  49. Riedelsheimer, C., et al., Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nature Genetics, 2012. 44(2): p. 217-220.
  50. Pyl, E.T., et al., Metabolism and Growth in Arabidopsis Depend on the Daytime Temperature but Are Temperature-Compensated against Cool Nights. Plant Cell, 2012. 24(6): p. 2443-2469.
  51. Kleessen, S., et al., Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nature Communications, 2012. 3.
  52. Baerenfaller, K., et al., Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Molecular Systems Biology, 2012. 8.
  53. Yazdanbakhsh, N., et al., Circadian control of root elongation and C partitioning in Arabidopsis thaliana. Plant Cell and Environment, 2011. 34(6): p. 877-894.
  54. Diaz, C., et al., Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes. Bmc Systems Biology, 2011. 5.
  55. Carillo, P., et al., Salt-induced accumulation of glycine betaine is inhibited by high light in durum wheat. Functional Plant Biology, 2011. 38(2): p. 139-150.
  56. Caldana, C., et al., High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. Plant Journal, 2011. 67(5): p. 869-884.
  57. Zhang, N.Y., et al., Genetic Analysis of Central Carbon Metabolism Unveils an Amino Acid Substitution That Alters Maize NAD-Dependent Isocitrate Dehydrogenase Activity. Plos One, 2010. 5(3).
  58. Sulpice, R., et al., Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions. Plant Cell, 2010. 22(8): p. 2872-2893.
  59. Sulpice, R., et al., Mild reductions in cytosolic NADP-dependent isocitrate dehydrogenase activity result in lower amino acid contents and pigmentation without impacting growth. Amino Acids, 2010. 39(4): p. 1055-1066.
  60. Stitt, M., R. Sulpice, and J. Keurentjes, Metabolic Networks: How to Identify Key Components in the Regulation of Metabolism and Growth. Plant Physiology, 2010. 152(2): p. 428-444.
  61. Sienkiewicz-Porzucek, A., et al., Mild Reductions in Mitochondrial NAD-Dependent Isocitrate Dehydrogenase Activity Result in Altered Nitrate Assimilation and Pigmentation But Do Not Impact Growth. Molecular Plant, 2010. 3(1): p. 156-173.
  62. Hummel, I., et al., Arabidopsis Plants Acclimate to Water Deficit at Low Cost through Changes of Carbon Usage: An Integrated Perspective Using Growth, Metabolite, Enzyme, and Gene Expression Analysis. Plant Physiology, 2010. 154(1): p. 357-372.
  63. Gonzalez, N., et al., Increased Leaf Size: Different Means to an End. Plant Physiology, 2010. 153(3): p. 1261-1279.
  64. Do, P.T., et al., The Influence of Fruit Load on the Tomato Pericarp Metabolome in a Solanum chmielewskii Introgression Line Population. Plant Physiology, 2010. 154(3): p. 1128-1142.
  65. Childs, L.H., et al., Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana. Bmc Genomics, 2010. 11.
  66. Zanor, M.I., et al., RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility. Plant Physiology, 2009. 150(3): p. 1204-1218.
  67. Sulpice, R., et al., Starch as a major integrator in the regulation of plant growth. Proceedings of the National Academy of Sciences of the United States of America, 2009. 106(25): p. 10348-10353.
  68. Meyer, R.C., et al., Analysis of Arabidopsis natural variation in biomass accumulation and metabolism. New Biotechnology, 2009. 25: p. S307-S307.
  69. Gibon, Y., et al., Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods. Plant Cell and Environment, 2009. 32(7): p. 859-874.
  70. Arrivault, S., et al., Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. Plant Journal, 2009. 59(5): p. 824-839.
  71. Armengaud, P., et al., EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture. Plant Journal, 2009. 57(5): p. 945-956.
  72. Armengaud, P., et al., Multilevel Analysis of Primary Metabolism Provides New Insights into the Role of Potassium Nutrition for Glycolysis and Nitrogen Assimilation in Arabidopsis Roots. Plant Physiology, 2009. 150(2): p. 772-785.
  73. Sienkiewicz-Porzucek, A., et al., Mild reductions in mitochondrial citrate synthase activity result in a compromised nitrate assimilation and reduced leaf pigmentation but have no effect on photosynthetic performance or growth. Plant Physiology, 2008. 147(1): p. 115-127.
  74. Nunes-Nesi, A., et al., The enigmatic contribution of mitochondrial function in photosynthesis. Journal of Experimental Botany, 2008. 59(7): p. 1675-1684.
  75. Keurentjes, J.J.B., et al., Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biology, 2008. 9(8).
  76. Hoehenwarter, W., et al., A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics, 2008. 8(20): p. 4214-4225.
  77. Bieniawska, Z., et al., Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiology, 2008. 147(1): p. 263-279.
  78. Sulpice, R., et al., Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell and Environment, 2007. 30(9): p. 1163-1175.
  79. Sulpice, R., et al., Association mapping within Arabidopsis accessions to identify regulation networks in the primary metabolism. Development of a rapid and sensitive non-radioactive assay for ribulose-1,5-bisphosphate carboxylase. Photosynthesis Research, 2007. 91(2-3): p. 238-238.
  80. Nunes-Nesi, A., et al., Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal, 2007. 50(6): p. 1093-1106.
  81. Huege, J., et al., GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after (CO2)-C-13 labelling. Phytochemistry, 2007. 68(16-18): p. 2258-2272.
  82. Yang, Y., et al., Fibrillin expression is regulated by abscisic acid response regulators and is involved in abscisic acid-mediated photoprotection. Proceedings of the National Academy of Sciences of the United States of America, 2006. 103(15): p. 6061-6066.
  83. Cross, J.M., et al., Variation of enzyme activities and metabolite levels in 24 arabidopsis accessions growing in carbon-limited conditions. Plant Physiology, 2006. 142(4): p. 1574-1588.
  84. Armengaud, P., et al., Systems biology of potassium nutrition in Arabidopsis thaliana. Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology, 2006. 143(4): p. S136-S136.
  85. Sakamoto, A., et al., Genetic modification of the fatty acid unsaturation of phosphatidylglycerol in chloroplasts alters the sensitivity of tobacco plants to cold stress. Plant Cell and Environment, 2004. 27(1): p. 99-105.
  86. Larher, F.R., et al., Damages to Oxidative Properties of Mitochondria from Leaf Tissues of C(3) Plants Could Be Assessed by the Amount of Proline Accumulated under Osmotic Tress. Acta Physiologiae Plantarum, 2004. 26(3): p. 90-90.
  87. Sulpice, R., et al., Enhanced formation of flowers in salt-stressed Arabidopsis after genetic engineering of the synthesis of glycine betaine. Plant Journal, 2003. 36(2): p. 165-176.
  88. Sulpice, R., et al., Enhanced formation of flowers and seeds in salt-stressed Arabidopsis after genetic engineering of the accumulation of glycinebetaine. Plant and Cell Physiology, 2003. 44: p. S166-S166.
  89. Mikami, K., et al., Histidine kinases, Hik2, Hik16 and Hik33, in Synechocystis sp PCC 6803 are involved in the torelance of photosystem II to environmental stress. Plant and Cell Physiology, 2003. 44: p. S82-S82.
  90. Larher, F.R., et al., An assessment of the physiological properties of the so-called compatible solutes using in vitro experiments with leaf discs. Plant Physiology and Biochemistry, 2003. 41(6-7): p. 657-666.
  91. Huguet-Robert, V., et al., The suppression of osmoinduced proline response of Brassica napus L. var oleifera leaf discs by polyunsaturated fatty acids and methyl-jasmonate. Plant Science, 2003. 164(1): p. 119-127.
  92. Ferjani, A., et al., Glucosylglycerol, a compatible solute, sustains cell division under salt stress. Plant Physiology, 2003. 131(4): p. 1628-1637.
  93. Sulpice, R., et al., Interaction between exogenous glycine betaine and the photorespiratory pathway in canola leaf discs. Physiologia Plantarum, 2002. 116(4): p. 460-467.
  94. Ferjani, A., et al., Glucosylglycerol protects Synechocystis cells against salt stress during cell division. Plant and Cell Physiology, 2002. 43: p. S55-S55.
  95. Gibon, Y., R. Sulpice, and F. Larher, Proline accumulation in canola leaf discs subjected to osmotic stress is related to the loss of chlorophylls and to the decrease of mitochondrial activity. Physiologia Plantarum, 2000. 110(4): p. 469-476.
  96. Dorin, D., et al., An atypical mitogen-activated protein kinase (MAPK) homologue expressed in gametocytes of the human malaria parasite Plasmodium falciparum – Identification of a MAPK signature. Journal of Biological Chemistry, 1999. 274(42): p. 29912-29920.
  97. Sulpice, R., et al., Exogenously supplied glycine betaine in spinach and rapeseed leaf discs: compatibility or non-compatibility? Plant Cell and Environment, 1998. 21(12): p. 1285-1292.